- Hem
- Om universitetet
- Hitta person
- Henrik Nilsson
Henrik Nilsson
Universitetslektor
Institutionen för biologi ochOm Henrik Nilsson
Google Scholar-sida https://scholar.google.com/citations?user=R9TtRLUAAAAJ
Publons-sida: https://publons.com/researcher/1198595
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The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications
reconsidered
K. Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, A. F. S. Taylor, T. W. May, T. G. Froslev, J. Pawlowska, B. Lindahl, K. Poldmaa, C. Truong, D. Vu, T. Hosoya, T. Niskanen, T. Piirmann, F. Ivanov, A. Zirk, M. Peterson, T. E. Cheeke, Y. Ishigami, A. T. Jansson, T. S. Jeppesen, E. Kristiansson, V. Mikryukov, J. T. Miller, R. Oono, F. J. Ossandon, J. Pauperio, I. Saar, D. Schigel, A. Suija, L. Tedersoo, U. Koljalg
Nucleic Acids Research - 2024 -
Global consortium for the classification of fungi and fungus-like
taxa
K. D. Hyde, M. A. Abdel-Wahab, J. Abdollahzadeh, P. D. Abeywickrama, S. Absalan, N. Afshari, A. M. Ainsworth, O. Y. Akulov, V. V. Aleoshin, A. M. Al-Sadi, P. Alvarado, A. Alves, G. Alves-Silva, M. Amalfi, Y. Amira, T. B. Amuhenage, J. L. Anderson, S. Aouali, A. Aptroot, C. C. S. Apurillo, J. P. M. Araujo, H. A. Ariyawansa, A. Armand, E. Arumugam, R. Asghari, D. M. A. Assis, S. Avasthi, E. Azevedo, A. H. Bahkali, M. Bakhshi, Z. Banihashemi, D. F. Bao, H. O. Baral, M. Barata, F. R. Barbosa, R. N. Barbosa, R. W. Barreto, C. Baschien, D. B. Belamesiatseva, M. Bennett Reuel, J. D. P. Bezerra, J. L. Bezerra, D. J. Bhat, C. S. Bhunjun, M. Bianchinotti, J. Blaszkowski, A. Blondelle, T. Boekhout, G. Bonito, S. Boonmee, N. Boonyuen, C. Bregant, P. Buchanan, D. Bundhun, G. Burgaud, T. Burgess, B. Buyck, M. Cabarroi-Hernandez, M. E. S. Caceres, M. F. Caeiro, L. Cai, M. F. Cai, M. S. Calabon, F. J. S. Calaca, M. Callalli, M. P. S. Camara, J. F. Cano-Lira, T. Cantillo, B. Cao, J. R. Carlavilla, A. Carvalho, R. F. Castaneda-Ruiz, L. Castlebury, O. Castro-Jauregui, M. D. Catania, L. H. Cavalcanti, J. Cazabonne, M. L. Cedeno-Sanchez, S. Chaharmiri-Dokhaharani, N. Chaiwan, N. Chakraborty, P. Chaverri, R. Cheewangkoon, C. Chen, C. Y. Chen, K. H. Chen, J. Chen, Q. Chen, W. H. Chen, Y. P. Chen, K. W. T. Chethana, C. Coleine, T. O. Conde, M. A. Corazon-Guivin, A. Cortes-Perez, D. H. Costa-Rezende, R. Courtecuisse, J. A. Crouch, P. W. Crous, B. K. Cui, Y. Y. Cui, D. K. A. da Silva, G. A. da Silva, I. R. da Silva, R. M. F. da Silva, A. C. da Silva Santos, D. Q. Dai, Y. C. Dai, U. Damm, Daroodi Zoha, K. Das, K. Das, N. Davoodian, E. A. Davydov, M. C. Dayarathne, C. Decock, M. D. de Groot, A. De Kesel, T. E. E. dela Cruz, R. De Lange, G. Delgado, C. M. Denchev, T. T. Denchev, N. T. de Oliveira, N. de Silva, F. A. de Souza, B. Dentinger, B. Devadatha, J. C. Dianese, B. Dima, A. G. Diniz, A. J. Dissanayake, L. S. Dissanayake, H. H. Dogan, M. Doilom, S. Dolatabadi, W. Dong, Z. Y. Dong, L. A. Dos Santos, E. R. Drechsler-Santos, T. Y. Du, M. K. Dubey, A. K. Dutta, E. Egidi, T. F. Elliott, M. S. Elshahed, M. Erdogdu, D. Ertz, J. Etayo, H. C. Evans, X. L. Fan, Y. G. Fan, A. G. Fedosova, J. Fell, A. L. Firmino, P. O. Fiuza, A. Flakus, C. A. Fragoso de Souza, J. C. Frisvad, S. C. Fryar, T. Gabaldon, A. J. Gajanayake, L. J. Galindo, P. B. Gannibal, D. Garcia, S. R. Garcia-Sandoval, L. Garzoli, A. K. Gautam, Z-W Ge, D. J. Gene, E. Gentekaki, M. Ghobad-Nejhad, A. J. Giachini, T. B. Gibertoni, A. Goes-Neto, D. Gomdola, A. R. Gomes de Farias, S. P. Gorjon, B. T. Goto, M. M. Granados-Montero, G. W. Griffith, J. Z. Groenewald, M. Groenewald, H. P. Grossart, C. Gueidan, A. Gunarathne, S. Gunaseelan, L. F. P. Gusmao, A. C. Gutierrez, L. Guzman-Davalos, D. Haelewaters, R. Halling, Y. F. Han, K. K. Hapuarachchi, C. B. Harder, T. C. Harrington, T. Hattori, M. Q. He, S. He, S. H. He, R. Healy, M. Herandez-Restrepo, G. Heredia, K. T. Hodge, M. Holgado-Rojas, S. Hongsanan, E. Horak, T. Hosoya, J. Houbraken, S. K. Huang, N. Huanraluek, J. S. Hur, V. G. Hurdeal, V. P. Hustad, M. Iotti, T. Iturriaga, E. Jafar, P. Janik, J. L. Jany, R. G. U. Jayalal, S. C. Jayasiri, R. S. Jayawardena, R. Jeewon, G. H. Jeronimo, A. L. Jesus, J. Jin, P. R. Johnston, E. B. G. Jones, Y. Joshi, A. Justo, P. Kaishian, M. Kakishima, M. Kaliyaperumal, G. P. Kang, J. C. Kang, J. M. Karakehian, O. Karimi, S. A. Karpov, S. C. Karunarathna, M. Kaufmann, M. Kemler, K. Kezo, S. Khyaju, M. Kirchmair, P. M. Kirk, M. J. Kitaura, M. Kolarik, A. Kong, F. Kuhar, M. Kukwa, S. Kumar, C. Lado, K. H. Larsson, K. P. D. Latha, H. B. Lee, M. Leonardi, D. L. Leontyev, A. S. Lestari, C. J. Y. Li, D. W. Li, H. Li, H. Y. Li, L. Li, Q. R. Li, Q. Li, W. L. Li, Y. Li, Y. C. Li, Y. X. Li, C. F. Liao, K. Liimatainen, Y. W. Lim, C. G. Lin, B. T. Linaldeddu, C. C. Linde, M. M. Linn, F. Liu, J. K. Liu, N. G. Liu, S. Liu, S. L. Liu, X. F. Liu, X. Y. Liu, X. Z. Liu, Z. B. Liu, L. Lu, Y. Z. Lu, T. Luangharn, J. J. Luangsa-ard, H. T. Lumbsch, S. Lumyong, L. Luo, M. Luo, Z. L. Luo, J. Ma, A. R. Machado, A. D. Madagammana, H. Madrid, F. Magurno, D. Magyar, N. Mahadevan, S. S. N. Maharachchikumbura, Y. Maimaiti, E. Malosso, D. S. Manamgoda, I. S. Manawasinghe, A. Mapook, D. S. Marasinghe, M. Mardones, Y. Marin-Felix, R. Marquez, H. Masigol, N. Matocec, T. W. May, E. H. C. McKenzie, A. Meiras-Ottoni, R. F. R. Melo, R. L. Mendes-Alvarenga, S. Mendieta, Q. F. Meng, A. Menkis, N. Menolli, A. Mesic, J. G. Meza Calvo, K. Mikhailov, S. L. Miller, B. Moncada, J. M. Moncalvo, J. S. Monteiro, M. Monteiro, H. M. Mora-Montes, P. A. Moreau, G. M. Mueller, S. Mukhopadyay, R. Murugadoss, L. G. Nagy, M. Najafiniya, C. M. Nanayakkara, C. C. Nascimento, Y. Nei, M. A. Neves, S. Neuhauser, A. G. T. Niego, R. Henrik Nilsson, T. Niskanen, N. Niveiro, M. T. Noorabadi, M. E. Noordeloos, C. Norphanphoun, N. B. Nunez Otano, R. P. O'Donnell, F. Oehl, O. P. Orlando, K. L. Pang, J. Pawlowska, U. Peintner, D. Pem, O. L. Pereira, R. H. Perera, J. Perez-Moreno, S. Perez-Ortega, G. Peter, A. J. L. Phillips, M. Phonemany, C. Phukhamsakda, K. Phutthacharoen, M. Piepenbring, C. L. A. Pires-Zottarelli, G. Poinar, A. Posta, M. Prieto, C. A. Quandt, R. Radek, K. Rahnama, K. N. A. Raj, K. C. Rajeshkumar, T. Rama, G. Rambold, S. Rasconi, A. R. Rathnayaka, M. Raza, G. C. Ren, G. L. Robledo, P. Rodriguez-Flakus, A. Ronikier, W. Rossi, M. Ryberg, L. R. Ryvarden, C. A. Salvador-Montoya, B. Samant, B. C. Samarakoon, M. C. Samarakoon, M. Sanchez-Garcia, M. Sandoval-Denis, B. Santamaria, A. L. C. M. A. Santiago, V. V. Sarma, A. Savchenko, K. Savchenko, R. K. Saxena, M. Scholler, N. Schoutteten, E. Seifollahi, L. Selbmann, F. Selcuk, I. C. Senanayake, K. Seto, T. G. Shabashova, H. W. Shen, Y. M. Shen, A. G. S. Silva-Filho, D. R. Simmons, R. Singh, E. B. Sir, C. G. Song, C. M. Souza-Motta, O. P. Sruthi, M. Stadler, A. M. Stchigel, J. Stemler, S. L. Stephenson, J. F. H. Strassert, H. L. Su, L. Su, S. Suetrong, B. Sulistyo, Y. F. Sun, Y. R. Sun, S. Svantesson, P. Sysouphanthong, S. Takamatsu, T. H. Tan, K. Tanaka, A. M. C. Tang, X. Tang, J. B. Tanney, N. M. Tavakol, J. E. Taylor, P. W. J. Taylor, L. Tedersoo, D. S. Tennakoon, G. K. Thamodini, M. Thines, N. Thongklang, P. Tiago, Q. Tian, W. H. Tian, L. Tibell, S. Tibell, S. Tibpromma, Z. Tkalcec, M. Tomsovsky, M. Toome-Heller, G. Torruella, A. Tsurykau, D. Udayanga, M. Ulukapi, W. A. Untereiner, B. A. Uzunov, L. G. Valle, W. Van Caenegem, S. Van den Wyngaert, N. Van Vooren, P. Velez, R. K. Verma, L. C. Vieira, W. A. S. Vieira, A. Vizzini, A. Walker, A. K. Walker, D. N. Wanasinghe, C. G. Wang, K. Wang, S. X. Wang, X. Y. Wang, Y. Wang, N. Wannasawang, F. Wartchow, D. P. Wei, X. L. Wei, J. F. White, N. N. Wijayawardene, S. N. Wijesinghe, D. S. A. Wijesundara, K. Wisitrassameewong, F. R. Worthy, F. Wu, G. Wu, H. X. Wu, N. Wu, W. P. Wu, C. Wurzbacher, Y. P. Xiao, Y. R. Xiong, B. Xu, L. J. Xu, R. Xu, R. F. Xu, R. J. Xu, T. M. Xu, L. Yakovchenko, J. Y. Yan, H. D. Yang, J. Yang, Z. L. Yang, Y. H. Yang, N. Yapa, E. Yasanthika, N. H. Youssef, F. M. Yu, Q. Yu, X. D. Yu, Y. X. Yu, Z. F. Yu, H. S. Yuan, Y. Yuan, A. Yurkov, D. Zafari, J. C. Zamora, R. Zare, M. Zeng, N. K. Zeng, X. Y. Zeng, F. Zhang, H. Zhang, J. F. Zhang, J. Y. Zhang, Q. Y. Zhang, S. N. Zhang, W. Zhang, Y. Zhang, Y. X. Zhang, C. L. Zhao, H. Zhao, Q. Zhao, R. L. Zhao, L. W. Zhou, M. Zhou, M. P. Zhurbenko, H. H. Zin, L. Zucconi
MYCOSPHERE - 2023 -
How, not if, is the question mycologists should be asking about DNA-based
typification.
R. Henrik Nilsson, Martin Ryberg, Christian Wurzbacher, Leho Tedersoo, Sten Anslan, Sergei Põlme, Viacheslav Spirin, Vladimir Mikryukov, Sten Svantesson, Martin Hartmann, Charlotte Lennartsdotter, Pauline Belford, Maryia Khomich, Alice Retter, Natàlia Corcoll, Daniela Gómez Martinez, Tobias Jansson, Masoomeh Ghobad-Nejhad, Duong Vu, Marisol Sanchez-Garcia, Erik Kristiansson, Kessy Abarenkov
MycoKeys - 2023 -
Phenotypic and transcriptomic acclimation of the green microalga Raphidocelis subcapitata to high environmental levels of the herbicide
diflufenican
Daniela Gómez-Martínez, Johanna Bengtson, Anders K. Nilsson, Adrian K Clarke, R. Henrik Nilsson, Erik Kristiansson, Natàlia Corcoll
Science of the Total Environment - 2023 -
The curse of the uncultured
fungus
Kessy Abarenkov, Erik Kristiansson, Martin Ryberg, Sandra Nogal-Prata, Daniela Gómez-Martínez, Katrin Stüer-Patowsky, Tobias Jansson, Sergei Palme, Masoomeh Ghobad-Nejhad, Natàlia Corcoll, Ruud Scharn, Marisol Sánchez-García, Maryia Khomich, Christian Wurzbacher, R. Henrik Nilsson
MycoKeys - 2022 -
Limited decadal growth of mountain birch saplings has minor impact on surrounding tundra
vegetation
Ruud Scharn, Isabel S. Negri, Maja Sundqvist, Jørn O. Løkken, Christine D. Bacon, Alexandre Antonelli, Annika Hofgaard, R. Henrik Nilsson, Robert G. Björk
Ecology and Evolution - 2022 -
Evidence for further non-coding RNA genes in the fungal rDNA
region
Magnus Alm Rosenblad, Ellen Larsson, A. Walker, N. Thongklang, C. Wurzbacher, R. Henrik Nilsson
MycoKeys - 2022 -
Global patterns in endemicity and vulnerability of soil
fungi.
Leho Tedersoo, Vladimir Mikryukov, Alexander Zizka, Mohammad Bahram, Niloufar Hagh-Doust, Sten Anslan, Oleh Prylutskyi, Manuel Delgado-Baquerizo, Fernando T Maestre, Jaan Pärn, Maarja Öpik, Mari Moora, Martin Zobel, Mikk Espenberg, Ülo Mander, Abdul Nasir Khalid, Adriana Corrales, Ahto Agan, Aída-M Vasco-Palacios, Alessandro Saitta, Andrea C Rinaldi, Annemieke Verbeken, Bobby P Sulistyo, Boris Tamgnoue, Brendan Furneaux, Camila Duarte Ritter, Casper Nyamukondiwa, Cathy Sharp, César Marín, Daniyal Gohar, Darta Klavina, Dipon Sharmah, Dong Qin Dai, Eduardo Nouhra, Elisabeth Machteld Biersma, Elisabeth Rähn, Erin K Cameron, Eske De Crop, Eveli Otsing, Evgeny A Davydov, Felipe E Albornoz, Francis Q Brearley, Franz Buegger, Geoffrey Zahn, Gregory Bonito, Inga Hiiesalu, Isabel C Barrio, Jacob Heilmann-Clausen, Jelena Ankuda, John Y Kupagme, Jose G Maciá-Vicente, Joseph Djeugap Fovo, József Geml, Juha M Alatalo, Julieta Alvarez-Manjarrez, Kadri Põldmaa, Kadri Runnel, Kalev Adamson, Kari Anne Bråthen, Karin Pritsch, Kassim I Tchan, Kęstutis Armolaitis, Kevin D Hyde, Kevin K Newsham, Kristel Panksep, Adebola A Lateef, Liis Tiirmann, Linda Hansson, Louis J Lamit, Malka Saba, Maria Tuomi, Marieka Gryzenhout, Marijn Bauters, Meike Piepenbring, Nalin Wijayawardene, Nourou S Yorou, Olavi Kurina, Peter E Mortimer, Peter Meidl, Petr Kohout, R. Henrik Nilsson, Rasmus Puusepp, Rein Drenkhan, Roberto Garibay-Orijel, Roberto Godoy, Saad Alkahtani, Saleh Rahimlou, Sergey V Dudov, Sergei Põlme, Soumya Ghosh, Sunil Mundra, Talaat Ahmed, Tarquin Netherway, Terry W Henkel, Tomas Roslin, Vincent Nteziryayo, Vladimir E Fedosov, Vladimir G Onipchenko, W A Erandi Yasanthika, Young Woon Lim, Nadejda A Soudzilovskaia, Alexandre Antonelli, Urmas Kõljalg, Kessy Abarenkov
Global change biology - 2022 -
The numbers of fungi: contributions from traditional taxonomic studies and challenges of
metabarcoding
Chayanard Phukhamsakda, R. Henrik Nilsson, Chitrabhanu S. Bhunjun, Antonio Roberto Gomes de Farias, Ya Ru Sun, Subodini N. Wijesinghe, Mubashar Raza, Dan Feng Bao, Li Lu, Saowaluck Tibpromma, Wei Dong, Danushka S. Tennakoon, Xing Guo Tian, Yin Ru Xiong, Samantha C. Karunarathna, Lei Cai, Zong Long Luo, Yong Wang, Ishara S. Manawasinghe, Erio Camporesi, Paul M. Kirk, Itthayakorn Promputtha, Chang Hsin Kuo, Hong Yan Su, Mingkwan Doilom, Yu Li, Yong Ping Fu, Kevin D. Hyde
Fungal diversity - 2022 -
Best practices in metabarcoding of fungi: From experimental design to
results
L. Tedersoo, M. Bahram, L. Zinger, R. Henrik Nilsson, P. G. Kennedy, T. Yang, S. Anslan, V. Mikryukov
Molecular Ecology - 2022 -
Above- and below-ground biodiversity responses to the prolonged flood pulse in central-western Amazonia,
Brazil
Y. K. Bredin, L. L. Hess, A. B. Scabin, M. Dunthorn, T. Haugaasen, C. A. Peres, R. Henrik Nilsson, Alexandre Antonelli, C. D. Ritter
Environmental DNA - 2022 -
Dnabarcoder: An open-source software package for analysing and predicting DNA sequence similarity cutoffs for fungal sequence
identification
D. Vu, R. Henrik Nilsson, G. J. M. Verkley
Molecular Ecology Resources - 2022 -
A price tag on
species
Urmas Kõljalg, R. Henrik Nilsson, Arnold Tobias Jansson, Allan Zirk, Kessy Abarenkov
Research Ideas and Outcomes_RIO - 2022 -
Fungal taxonomy and sequence-based
nomenclature
R. Lucking, M. C. Aime, B. Robbertse, A. N. Miller, T. Aoki, H. A. Ariyawansa, G. Cardinali, P. W. Crous, I. S. Druzhinina, D. M. Geiser, D. L. Hawksworth, K. D. Hyde, L. Irinyi, R. Jeewon, P. R. Johnston, P. M. Kirk, E. Malosso, T. W. May, W. Meyer, R. Henrik Nilsson, M. Opik, V. Robert, M. Stadler, M. Thines, D. Vu, A. M. Yurkov, N. Zhang, C. L. Schoch
Nature Microbiology - 2021 -
Fusarium: more than a node or a foot-shaped basal
cell
P. W. Crous, L. Lombard, M. Sandoval-Denis, K. A. Seifert, H. J. Schroers, P. Chaverri, J. Gené, J. Guarro, Y. Hirooka, K. Bensch, G. H.J. Kema, S. C. Lamprecht, L. Cai, A. Y. Rossman, M. Stadler, R. C. Summerbell, J. W. Taylor, S. Ploch, C. M. Visagie, N. Yilmaz, J. C. Frisvad, A. M. Abdel-Azeem, J. Abdollahzadeh, A. Abdolrasouli, A. Akulov, J. F. Alberts, J. P.M. Araújo, H. A. Ariyawansa, M. Bakhshi, M. Bendiksby, A. Ben Hadj Amor, J. D.P. Bezerra, T. Boekhout, M. P.S. Câmara, M. Carbia, G. Cardinali, R. F. Castañeda-Ruiz, A. Celis, V. Chaturvedi, J. Collemare, D. Croll, U. Damm, C. A. Decock, R. P. de Vries, C. N. Ezekiel, X. L. Fan, N. B. Fernández, E. Gaya, C. D. González, D. Gramaje, J. Z. Groenewald, M. Grube, M. Guevara-Suarez, V. K. Gupta, V. Guarnaccia, A. Haddaji, F. Hagen, D. Haelewaters, K. Hansen, A. Hashimoto, M. Hernández-Restrepo, J. Houbraken, V. Hubka, K. D. Hyde, T. Iturriaga, R. Jeewon, P. R. Johnston, Jurjević, Karalti, L. Korsten, E. E. Kuramae, I. Kušan, R. Labuda, D. P. Lawrence, H. B. Lee, C. Lechat, H. Y. Li, Y. A. Litovka, S. S.N. Maharachchikumbura, Y. Marin-Felix, B. Matio Kemkuignou, N. Matočec, A. R. McTaggart, P. Mlčoch, L. Mugnai, C. Nakashima, R. Henrik Nilsson, S. R. Noumeur, I. N. Pavlov, M. P. Peralta, A. J.L. Phillips, J. I. Pitt, G. Polizzi, W. Quaedvlieg, K. C. Rajeshkumar, S. Restrepo, A. Rhaiem, J. Robert, V. Robert, A. M. Rodrigues
Studies in Mycology - 2021 -
Digging Up the Roots: Taxonomic and Phylogenetic Disentanglements in Corticiaceae s.s. (Corticiales, Basidiomycota) and Evolution of Nutritional
Modes
Masoomeh Ghobad-Nejhad, Ewald Langer, Karen Nakasone, Paul Diederich, R. Henrik Nilsson, Mario Rajchenberg, James Ginns
Frontiers in Microbiology - 2021 -
The Global Soil Mycobiome consortium dataset for boosting fungal diversity
research
L. Tedersoo, V. Mikryukov, S. Anslan, M. Bahram, A. N. Khalid, A. Corrales, A. Agan, A. M. Vasco-Palacios, A. Saitta, A. Antonelli, A. C. Rinaldi, A. Verbeken, B. P. Sulistyo, B. Tamgnoue, B. Furneaux, C. D. Ritter, C. Nyamukondiwa, C. Sharp, C. Marin, D. Q. Dai, D. Gohar, D. Sharmah, E. M. Biersma, E. K. Cameron, E. De Crop, E. Otsing, E. A. Davydov, F. E. Albornoz, F. Q. Brearley, F. Buegger, G. Gates, G. Zahn, G. Bonito, I. Hiiesalu, I. Hiiesalu, I. Zettur, I. C. Barrio, J. Parn, J. Heilmann-Clausen, J. Ankuda, J. Y. Kupagme, J. Sarapuu, J. G. Macia-Vicente, J. D. Fovo, J. Geml, J. M. Alatalo, J. Alvarez-Manjarrez, J. Monkai, K. Poldmaa, K. Runnel, K. Adamson, K. A. Brathen, K. Pritsch, K. I. Tchan, K. Armolaitis, K. D. Hyde, K. K. Newsham, K. Panksep, L. A. Adebola, L. J. Lamit, M. Saba, M. E. D. Caceres, M. Tuomi, M. Gryzenhout, M. Bauters, M. Balint, N. Wijayawardene, N. Hagh-Doust, N. S. Yorou, O. Kurina, P. E. Mortimer, P. Meidl, R. Henrik Nilsson, R. Puusepp, R. Casique-Valdes, R. Drenkhan, R. Garibay-Orijel, R. Godoy, S. Alfarraj, S. Rahimlou, S. Polme, S. V. Dudov, S. Mundra, T. Ahmed, T. Netherway, T. W. Henkel, T. Roslin, V. E. Fedosov, V. G. Onipchenko, W. A. E. Yasanthika, Y. W. Lim, M. Piepenbring, D. Klavina, U. Koljalg, K. Abarenkov
Fungal Diversity - 2021 -
Decreased soil moisture due to warming drives community transitions in the
tundra
Ruud Scharn, Chelsea J. Little, Christine D. Bacon, Juha M. Alatalo, Alexandre Antonelli, Mats P. Björkman, Ulf Molau, R. Henrik Nilsson, Robert G. Björk
Environmental Research Letters - 2021 -
Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA
Metabarcoding
C. D. Ritter, D. Forster, J. A. R. Azevedo, Alexandre Antonelli, R. Henrik Nilsson, M. E. Trujillo, M. Dunthorn
Microbial Ecology - 2021 -
Triclosan changes community composition and selects for specific bacterial taxa in marine periphyton biofilms in low nanomolar
concentrations
Martin Eriksson, Kemal Sanli, R. Henrik Nilsson, Alexander Eiler, Natàlia Corcoll, Carl-Henrik Johansson, Thomas Backhaus, Hans Blanck, Erik Kristiansson
Ecotoxicology - 2020 -
FungalTraits: a user-friendly traits database of fungi and fungus-like
stramenopiles
S. Polme, K. Abarenkov, R. Henrik Nilsson, B. D. Lindahl, K. E. Clemmensen, H. Kauserud, N. Nguyen, R. Kjoller, S. T. Bates, P. Baldrian, T. G. Froslev, K. Adojaan, A. Vizzini, A. Suija, D. Pfister, H. O. Baral, H. Jarv, H. Madrid, J. Norden, J. K. Liu, J. Pawlowska, K. Poldmaa, K. Partel, K. Runnel, K. Hansen, K. H. Larsson, K. D. Hyde, M. Sandoval-Denis, M. E. Smith, M. Toome-Heller, N. N. Wijayawardene, N. Menolli, N. K. Reynolds, R. Drenkhan, S. S. N. Maharachchikumbura, T. B. Gibertoni, T. Laessoe, W. Davis, Y. Tokarev, A. Corrales, A. M. Soares, A. Agan, A. R. Machado, A. Arguelles-Moyao, A. Detheridge, A. de Meiras-Ottoni, A. Verbeken, A. K. Dutta, B. K. Cui, C. K. Pradeep, C. Marin, D. Stanton, D. Gohar, D. N. Wanasinghe, E. Otsing, F. Aslani, G. W. Griffith, T. H. Lumbsch, H. P. Grossart, H. Masigol, I. Timling, I. Hiiesalu, J. Oja, J. Y. Kupagme, J. Geml, J. Alvarez-Manjarrez, K. Ilves, K. Loit, K. Adamson, K. Nara, K. Kungas, K. Rojas-Jimenez, K. Bitenieks, L. Irinyi, L. L. Nagy, L. Soonvald, L. W. Zhou, L. Wagner, M. C. Aime, M. Opik, M. I. Mujica, M. Metsoja, M. Ryberg, M. Vasar, M. Murata, M. P. Nelsen, M. Cleary, M. C. Samarakoon, M. Doilom, M. Bahram, N. Hagh-Doust, O. Dulya, P. Johnston, P. Kohout, Q. Chen, Q. Tian, R. Nandi, R. Amiri, R. H. Perera, R. D. Chikowski, R. L. Mendes-Alvarenga, R. Garibay-Orijel, R. Gielen, R. T. Phookamsak, R. S. Jayawardena, S. Rahimlou, S. C. Karunarathna, S. Tibpromma, S. P. Brown, S. K. Sepp, S. Mundra, Z. H. Luo, T. Bose, T. Vahter, T. Netherway, T. Yang, T. May, T. Varga, W. Li, V. R. M. Coimbra, V. R. T. de Oliveira, V. X. de Lima, V. S. Mikryukov, Y. Z. Lu, Y. Matsuda, Y. Miyamoto, U. Koljalg, L. Tedersoo
Fungal Diversity - 2020 -
When mycologists describe new species, not all relevant information is provided (clearly
enough).
Louisa Durkin, Tobias Jansson, Marisol Sanchez, Maryia Khomich, Martin Ryberg, Erik Kristiansson, R. Henrik Nilsson
MycoKeys - 2020 -
Significant taxon sampling gaps in DNA databases limit the operational use of marine macrofauna
metabarcoding
Jon Thomassen Hestetun, Einar Bye-Ingebrigtsen, R. Henrik Nilsson, Adrian G. Glover, Per-Otto Johansen, Thomas G. Dahlgren
Marine Biodiversity - 2020 -
The taxon hypothesis paradigm—On the unambiguous detection and communication of
taxa
U. Kõljalg, R. Henrik Nilsson, D. Schigel, L. Tedersoo, Karl-Henrik Larsson, T. W. May, A. F. S. Taylor, T. S. Jeppesen, T. G. Frøslev, B. D. Lindahl, K. Põldmaa, I. Saar, A. Suija, A. Savchenko, I. Yatsiuk, K. Adojaan, F. Ivanov, T. Piirmann, R. Pöhönen, A. Zirk, K. Abarenkov
Microorganisms - 2020 -
Fungal communities in groundwater springs along the volcanic zone of
Iceland
Christian Wurzbacher, A. K. Kreiling, Sten Svantesson, S. van den Wyngaert, Ellen Larsson, F. Heeger, R. Henrik Nilsson, S. Palsson
Inland Waters - 2020 -
Fungal functional ecology: bringing a trait-based approach to plant-associated
fungi.
Amy E Zanne, Kessy Abarenkov, Michelle E Afkhami, Carlos A Aguilar-Trigueros, Scott Bates, Jennifer M Bhatnagar, Posy E Busby, Natalie Christian, William K Cornwell, Thomas W Crowther, Habacuc Flores-Moreno, Dimitrios Floudas, Romina Gazis, David Hibbett, Peter Kennedy, Daniel L Lindner, Daniel S Maynard, Amy M Milo, R. Henrik Nilsson, Jeff Powell, Mark Schildhauer, Jonathan Schilling, Kathleen K Treseder
Biological reviews of the Cambridge Philosophical Society - 2020 -
Notes, outline and divergence times of
Basidiomycota
M. Q. He, R. L. Zhao, K. D. Hyde, D. Begerow, M. Kemler, A. Yurkov, E. H. C. McKenzie, O. Raspe, M. Kakishima, S. Sanchez-Ramirez, E. C. Vellinga, R. Halling, V. Papp, I. V. Zmitrovich, B. Buyck, D. Ertz, N. N. Wijayawardene, B. K. Cui, N. Schoutteten, X. Z. Liu, T. H. Li, Y. J. Yao, X. Y. Zhu, A. Q. Liu, G. J. Li, M. Z. Zhang, Z. L. Ling, B. Cao, V. Antonin, T. Boekhout, B. D. B. da Silva, E. De Crop, C. Decock, B. Dima, A. K. Dutta, J. W. Fell, J. Geml, M. Ghobad-Nejhad, A. J. Giachini, T. B. Gibertoni, S. P. Gorjon, D. Haelewaters, S. H. He, B. P. Hodkinson, E. Horak, T. Hoshino, A. Justo, Y. W. Lim, N. Menolli, A. Mesic, J. M. Moncalvo, G. M. Mueller, L. G. Nagy, R. Henrik Nilsson, M. Noordeloos, J. Nuytinck, T. Orihara, C. Ratchadawan, M. Rajchenberg, A. G. S. Silva, M. A. Sulzbacher, Z. Tkalcec, R. Valenzuela, A. Verbeken, A. Vizzini, F. Wartchow, T. Z. Wei, M. Weiss, C. L. Zhao, P. M. Kirk
Fungal Diversity - 2019 -
Exploring the taxonomic composition of two fungal communities on the Swedish west coast through
metabarcoding
Alice Retter, R. Henrik Nilsson, Sarah Bourlat
Biodiversity Data Journal - 2019 -
The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across
Amazonia
Camila Ritter, Sören Faurby, Dominic J. Bennett, Luciano N. Naka, Hans ter Steege, Alexander Zizka, Quiterie Haenel, R. Henrik Nilsson, Alexandre Antonelli
Scientific Reports - 2019 -
Biodiversity assessments in the 21st century: The potential of insect traps to complement environmental samples for estimating eukaryotic and prokaryotic diversity using high-throughput DNA
metabarcoding.
Camila Ritter, Sibylle Häggqvist, Ilari Sääksjärvi, Dave Karlsson, Muthama Muasya, R. Henrik Nilsson, Alexandre Antonelli
Genome - 2019 -
Mycobiome diversity: high-throughput sequencing and identification of
fungi.
R. Henrik Nilsson, Sten Anslan, Mohammad Bahram, Christian Wurzbacher, Petr Baldrian, Leho Tedersoo
Nature reviews. Microbiology - 2019 -
Locality or habitat? Exploring predictors of biodiversity in
Amazonia
Camila Ritter, Alexander Zizka, Christopher Barnes, R. Henrik Nilsson, Fabian Roger, Alexandre Antonelli
Ecography - 2019 -
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic
classifications.
R. Henrik Nilsson, Karl-Henrik Larsson, Andy F S Taylor, Johan Bengtsson-Palme, Thomas S Jeppesen, Dmitry Schigel, Peter Kennedy, Kathryn Picard, Frank Oliver Glöckner, Leho Tedersoo, Irja Saar, Urmas Kõljalg, Kessy Abarenkov
Nucleic acids research - 2019 -
Introducing ribosomal tandem repeat barcoding for
fungi
Christian Wurzbacher, Ellen Larsson, Johan Bengtsson-Palme, Silke Van den Wyngaert, Sten Svantesson, Erik Kristiansson, Maiko Kagami, R. Henrik Nilsson
Molecular Ecology Resources - 2019 -
Solving the taxonomic identity of Pseudotomentella tristis s.l. (Thelephorales, Basidiomycota) - a multi-gene phylogeny and taxonomic review, integrating ecological and geographical
data
Sten Svantesson, K. H. Larsson, Urmas Koljalg, T. W. May, Patrik Cangren, R. Henrik Nilsson, Ellen Larsson
Mycokeys - 2019 -
Phenotypic and genotypic adaptations in a riverine green alga (Chlorophyceae, Selenastraceae) as a response to long-term exposure to chemical
stress
Max Karlsson, Oskar Johansson, R. Henrik Nilsson, Thomas Backhaus, Adrian K Clarke, Natàlia Corcoll
SETAC Helsinki - SETAC Europe 29th Annual Meeting, 26 - 30 May 2019, Helsinki, Finland - 2019 -
Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal
metabarcoding
Sten Anslan, R. Henrik Nilsson, Christian Wurzbacher, Petr Baldrian, Leho Tedersoo, Mohammad Bahram
MycoKeys - 2018 -
Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen,
UK)
R. Henrik Nilsson, A. F. S. Taylor, R. I. Adams, C. Baschien, Johan Bengtsson-Palme, Patrik Cangren, C. Coleine, H. M. Daniel, S. I. Glassman, Y. Hirooka, L. Irinyi, R. Irsenaite, P. M. Martin-Sanchez, W. Meyer, S. Y. Oh, J. P. Sampaio, K. A. Seifert, F. Sklenar, D. Stubbe, S. O. Suh, R. Summerbell, Sten Svantesson, M. Unterseher, C. M. Visagie, M. Weiss, J. H. C. Woudenberg, Christian Wurzbacher, S. Van den Wyngaert, N. Yilmaz, A. Yurkov, U. Koljalg, K. Abarenkov
Mycokeys - 2018 -
Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic
marker
Johan Bengtsson-Palme, Rodney T Richardson, Marco Meola, Christian Wurzbacher, Émilie D Tremblay, Kaisa Thorell, Kärt Kanger, Guillaume J Bilodeau, Reed M Johnson, Martin Hartmann, R. Henrik Nilsson
Bioinformatics (Oxford, England) - 2018 -
High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across
Amazonia.
Camila Ritter, Alexander Zizka, Fabian Roger, Hanna Tuomisto, Christopher Barnes, R. Henrik Nilsson, Alexandre Antonelli
PeerJ - 2018 -
New light on names and naming of dark
taxa
M. Ryberg, R. Henrik Nilsson
MycoKeys - 2018 -
Relationships within Capitotricha bicolor (Lachnaceae, Ascomycota) as inferred from ITS rDNA sequences, including some notes on the Brunnipila and Erioscyphella
clades
Markéta Šandová, R. Henrik Nilsson, Miroslav Kolařík
Mycological progress - 2018 -
Protax-fungi: A web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer
sequences
Kessy Abarenkov, Panu Somervuo, R. Henrik Nilsson, Paul M. Kirk, Tea Huotari, Nerea Abrego, Otso Ovaskainen
New Phytologist - 2018 -
Mycobiomes of sympatric Amorphophallus albispathus (Araceae) and Camellia sinensis (Theaceae) – a case study reveals clear tissue preferences and differences in diversity and
composition
Martin Unterseher, Samantha C. Karunarathna, García Roberto Cruz, Nikki H. Dagamac, Mathilde B. Dahl, Serena E. Dool, Michelle Galla, Lina Herbst, R. Henrik Nilsson, Sébastien J. Puechmaille, Caroline Schöner, Michael Schöner, Abu B. Siddique, Annette Teltewskoi, Kristina Wicke, David G. Würth, Christian Wurzbacher, Kevin D. Hyde
Mycological Progress - 2018 -
Poorly known microbial taxa dominate the microbiome of permafrost thaw
ponds.
Christian Wurzbacher, R. Henrik Nilsson, Milla Rautio, Sari Peura
The ISME journal - 2017 -
Novel soil-inhabiting clades fill gaps in the fungal tree of
life
Leho Tedersoo, Mohammad Bahram, Rasmus Puusepp, R. Henrik Nilsson, Timothy Y. James
Microbiome - 2017 -
Unexpected high species diversity among European stalked puffballs – a contribution to the phylogeny andtaxonomy of the genus Tulostoma
(Agaricales)
Mikael Jeppson, Alberto Altés, Gabriel Moreno, R. Henrik Nilsson, Yolanda Loarce, Alfredo de Bustos, Ellen Larsson
MycoKeys - 2017 -
Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of
Taxa.
Alexandre Antonelli, Hannes Hettling, Fabien L. Condamine, Karin Vos, R. Henrik Nilsson, Michael J Sanderson, Hervé Sauquet, Ruud Scharn, Daniele Silvestro, Mats H. Töpel, Christine D. Bacon, Bengt Oxelman, Rutger A Vos
Systematic biology - 2017 -
Morphology and phylogeny reveal a novel hydnoid taxon from India: Mycorrhaphoides stalpersii gen. and sp.
nov
M. E. Hembrom, Kanad Das, R. Henrik Nilsson, Arvind Parihar, Abhishek Baghela, Nikita Mehta, S. K. Singh, Nils Hallenberg
Nordic Journal of Botany - 2017 -
Critical Issues in mycobiota
analysis
Bettina Halwachs, N Madhusudhan, R Krause, R. Henrik Nilsson, C Moissl-Eichinger, C Hoegenauer, GG Thallinger, G Gorkiewicz
Frontiers in Microbiology - 2017 -
Environmental impact assessment in Brazilian Amazonia: Challenges and prospects to assess
biodiversity
Camila Ritter, Gabriel McCrate, R. Henrik Nilsson, Philip M. Fearnside, Ulrika Palme, Alexandre Antonelli
Biological Conservation - 2017 -
Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near
satisfactory
R. Henrik Nilsson, Marisol Sánchez-García,, Martin Ryberg, Kessy Abarenkov, Christian Wurzbacher, Erik Kristiansson
MycoKeys - 2017 -
Morphologic and molecular data help adopting the insect-pathogenic nephridiophagids (Nephridiophagidae) among the early diverging fungal lineages, close to the
Chytridiomycota
Renate Radek, Christian Wurzbacher, Sebastian Gisder, R. Henrik Nilsson, Anja Owerfeldt, Elke Genersch, Paul M. Kirk, Kerstin Voigt
MycoKeys - 2017 -
Top 50 most wanted
fungi
R. Henrik Nilsson, Christian Wurzbacher, Mohammad Bahram, Victor R. M. Coimbra, Ellen Larsson, Leho Tedersoo, Jonna S. Eriksson, Camila Duarte, Sten Svantesson, Marisol Sánchez-García, Martin Ryberg, Erik Kristiansson, Kessy Abarenkov
MycoKeys - 2016 -
Habitat conditions and phenological tree traits overrule the influence of tree genotype in the needle mycobiome–Picea glauca system at an arctic treeline
ecotone
Pascal Eusemann, Martin Schnittler, R. Henrik Nilsson, Ari Jumpponen, Mathilde B. Dahl, David G. Würth, Allan Buras, Martin Wilmking, Martin Unterseher
New Phytologist - 2016 -
Sequence-based classification and identification of
Fungi
David Hibbett, Kessy Abarenkov, Urmas Koljalg, Maarja Opik, Benli Chai, James R Cole, Qiong Wang, Pedro W. Crous, Vincent A.R.G. Robert, Thorunn Helgason, Josh Herr, Paul Kirk, Shiloh Lueschow, Kerry O'Donnell, R. Henrik Nilsson, Ryoko Oono, Conrad L. Schoch, Christopher Smyth, Donny Walker, Andrea Porras-Alfaro, John W Taylor, David M. Geiser
Mycologia - 2016 -
Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes,
Basidiomycota)
Magnus Alm Rosenblad, María P. Martín, Leho Tedersoo, Martin K. Ryberg, Ellen Larsson, Christian Wurzbacher, Kessy Abarenkov, R. Henrik Nilsson
MycoKeys - 2016 -
New Ph.D. students in the empirical sciences should be recruited into ongoing scientific studies right from the
start
Martin Ryberg, Erik Kristiansson, Christian Wurzbacher, R. Henrik Nilsson
Journal of Brief Ideas - 2016 -
Unbiased probabilistic taxonomic classification for DNA
barcoding
P. Somervuo, S. Koskela, J. Pennanen, R. Henrik Nilsson, O. Ovaskainen
Bioinformatics - 2016 -
Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg,
Sweden)
Kessy Abarenkov, Rachel I. Adams, Irinyi Laszlo, Ahto Agan, Elia Ambrosio, Alexandre Antonelli, Mohammad Bahram, Johan Bengtsson-Palme, Gunilla Bok, Patrik Cangren, Victor R. M. Coimbra, Claudia Coleine, Claes G. R. Gustafsson, Jinhong He, Tobias Hofmann, Erik Kristiansson, Ellen Larsson, Tomas Larsson, Yingkui Liu, Svante Martinsson, Wieland Meyer, Marina Panova, Nuttapon Pombubpa, Camila Ritter, Martin Ryberg, Sten Svantesson, Ruud Scharn, Ola Svensson, Mats H. Töpel, Martin Unterseher, Cobus Visagie, Christian Wurzbacher, Andy F.S. Taylor, Urmas Kõljalg, Lynn Schriml, R. Henrik Nilsson
MycoKeys - 2016 -
Molecular identification of
fungi
Leho Tedersoo, R. Henrik Nilsson
Molecular Mycorrhizal Symbiosis. Francis Martin (ed.) - 2016 -
Digital identifiers for fungal
species
Urmas Kõljalg, Leho Tedersoo, R. Henrik Nilsson, Kessy Abarenkov
Science - 2016 -
Metaxa2 Diversity Tools: Easing microbial community analysis with
Metaxa2
Johan Bengtsson-Palme, Kaisa Thorell, Christian Wurzbacher, Åsa Sjöling, R. Henrik Nilsson
Ecological Informatics - 2016 -
Molecular techniques in mycological studies and sequence data curating: quality control and
challenges
R. Henrik Nilsson, Kessy Abarenkov, Urmas Kõljalg
Biology of Microfungi - 2016 -
Future perspectives and challenges of fungal systematics in the age of big
data
Zheng Wang, R. Henrik Nilsson, Timothy Y. James, Yucheng Dai, Jeffrey P. Townsend
Biology of Microfungi - 2016 -
Metagenomic Sequencing of Marine Periphyton: Taxonomic and Functional Insights into Biofilm
Communities
Kemal Sanli, Johan Bengtsson-Palme, R. Henrik Nilsson, Erik Kristiansson, Magnus Alm Rosenblad, Hans Blanck, Karl Martin Eriksson
Frontiers in Microbiology - 2015 -
Response to Comment on “Global diversity and geography of soil
fungi”
Leho Tedersoo, Mohammad Bahram, Sergei Põlme, Sten Anslan, Taavi Riit, Urmas Kõljalg, R. Henrik Nilsson, Falk Hildebrand, Kessy Abarenkov
Science - 2015 -
Metaxa2: Improved identification and taxonomic classification of small and large subunit rRNA in metagenomic
data
Johan Bengtsson-Palme, Martin Hartmann, Karl Martin Eriksson, Chandan Pal, Kaisa Thorell, D. G. Joakim Larsson, R. Henrik Nilsson
Molecular Ecology Resources - 2015 -
The Faces of Fungi database: fungal names linked with morphology, phylogeny and human
impacts
Subashini C. Jayasiri, Kevin D. Hyde, Hiran A. Ariyawansa, Jayarama Bhat, Bart Buyck, Lei Cai, Yu-cheng Dai, Kamel A. Abd-Elsalam, Damien Ertz, Iman Hidayat, Rajesh Jeewon, E. B. Gareth Jones, Ali H. Bahkali, Samantha C. Karunarathna, Jian-Kui Liu, J. Jennifer Luangsa-ard, H. Thorsten Lumbsch, Sajeewa S. N. Maharachchikumbura, Eric H. C. McKenzie, Jean-Marc Moncalvo, Masoomeh Ghobad-Nejhad, R. Henrik Nilsson, Ka-Lai Pang, Olinto L. Pereira, Alan J. L. Phillips, Olivier Raspé, Adam W. Rollins, Andrea I. Romero, Javier Etayo, Faruk Selçuk, Steven L. Stephenson, Satinee Suetrong, Joanne E. Taylor, Clement K. M. Tsui, Alfredo Vizzini, Mohamed A. Abdel-Wahab, Ting-Chi Wen, Saranyaphat Boonmee, Dong Qin Dai, Dinushani A. Daranagama, Asha J. Dissanayake, Anusha H. Ekanayaka, S. C. Fryar, Sinang Hongsanan, Ruvishika S. Jayawardena, Wen-Jing Li, Rekhani H. Perera, R. Phookamsak, Nimali I. de Silva, Kasun M. Thambugala, Qing Tian, Nalin N. Wijayawardene, Rui-Lin Zhao, Qi Zhao, Ji-Chuan Kang, Itthayakorn Promputtha
Fungal diversity - 2015 -
Standardizing metadata and taxonomic identification in metabarcoding
studies
Leho Tedersoo, Kelly S. Ramirez, R. Henrik Nilsson, Aivi Kaljuvee, Urmas Kõljalg, Kessy Abarenkov
GigaScience - 2015 -
Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly
Facilities
Aleksandra Checinska, Alexander J. Probst, Parag Vaishampayan, James R. White, Deepika Kumar, Victor G. Stepanov, George E. Fox, R. Henrik Nilsson, Duane L. Pierson, Jay Perry, Kasthuri Venkateswaran
Microbiome - 2015 -
Response to Comment on "Global diversity and geography of soil
fungi"
L. Tedersoo, M. Bahram, S. Polme, S. Anslan, T. Riit, U. Koljalg, R. Henrik Nilsson, F. Hildebrand, K. Abarenkov
Science - 2015 -
A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing
efforts
R. Henrik Nilsson, Leho Tedersoo, Martin Ryberg, Erik Kristiansson, Martin Hartmann, Martin Unterseher, Teresita M. Porter, Johan Bengtsson-Palme, Donald M. Walker, Filipe de Sousa, Hannes Andres Gamper, Ellen Larsson, Karl-Henrik Larsson, Urmas Kõljalg, Robert C. Edgar, Kessy Abarenkov
Microbes and Environments - 2015 -
Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of
fungi
Leho Tedersoo, Sten Anslan, Mohammad Bahram, Sergei Põlme, Taavi Riit, Ingrid Liiv, Urmas Kõljalg, Veljo Kisand, R. Henrik Nilsson, Falk Hildebrand, Peer Bork, Kessy Abarenkov
MycoKeys - 2015 -
Bacterial and Fungal Communities in a Degraded Ombrotrophic Peatland Undergoing Natural and Managed
Re-Vegetation
David R. Elliott, Simon J.M. Caporn, Felix Nwaishi, R. Henrik Nilsson, Robin Sen
PLoS ONE - 2015 -
Unifying
fungi
R. Henrik Nilsson
Science & Technology - 2015 -
SUPERSMART: ecology and evolution in the era of big
data
Alexandre Antonelli, Fabien L. Condamine, Johannes Hettling, Karin Nilsson, R. Henrik Nilsson, Bengt Oxelman, Michael J Sanderson, Herve Sauquet, Ruud Scharn, Daniele Silvestro, Mats H. Töpel, Rutger A Vos
PeerJ PrePrints - 2014 -
Global diversity and geography of soil
fungi
Leho Tedersoo, Mohammad Bahram, Sergei Põlme, Urmas Kõljalg, Nourou S. Yorou, Ravi Wijesundera, Luis Villarreal Ruiz, Aída M. Vasco-Palacios, Pham Quang Thu, Ave Suija, Matthew E. Smith, Cathy Sharp, Erki Saluveer, Alessandro Saitta, Miguel Rosas, Taavi Riit, David Ratkowsky, Karin Pritsch, Kadri Põldmaa, Meike Piepenbring, Cherdchai Phosri, Marko Peterson, Kaarin Parts, Kadri Pärtel, Eveli Otsing, Eduardo Nouhra, André L. Njouonkou, R. Henrik Nilsson, Luis N. Morgado, Jordan Mayor, Tom W. May, Luiza Majuakim, D. Jean Lodge, Su See Lee, Karl-Henrik Larsson, Petr Kohout, Kentaro Hosaka, Indrek Hiiesalu, Terry W. Henkel, Helery Harend, Liang-dong Guo, Alina Greslebin, Gwen Grelet, Jozsef Geml, Genevieve Gates, William Dunstan, Chris Dunk, Rein Drenkhan, John Dearnaley, André De Kesel, Tan Dang, Xin Chen, Franz Buegger, Francis Q. Brearley, Gregory Bonito, Sten Anslan, Sandra Abell, Kessy Abarenkov
Science - 2014 -
One stop shop: backbones trees for important phytopathogenic genera: I
(2014)
Kevin D. Hyde, R. Henrik Nilsson, S. Aisyah Alias, Hiran A. Ariyawansa, Jaime E. Blair, Lei Cai, Arthur W. A. M. de Cock, Asha J. Dissanayake, Sally L. Glockling, Ishani D. Goonasekara, Michał Gorczak, Matthias Hahn, Ruvishika S. Jayawardena, Jan A. L. van Kan, Matthew H. Laurence, C. André Lévesque, Xinghong Li, Jian-Kui Liu, Sajeewa S. N. Maharachchikumbura, Dimuthu S. Manamgoda, Frank N. Martin, Eric H. C. McKenzie, Alistair R. McTaggart, Peter E. Mortimer, Prakash V. R. Nair, Julia Pawłowska, Tara L. Rintoul, Roger G. Shivas, Christoffel F. J. Spies, Brett A. Summerell, Paul W. J. Taylor, Razak B. Terhem, Dhanushka Udayanga, Niloofar Vaghefi, Grit Walther, Mateusz Wilk, Marta Wrzosek, Jian-Chu Xu, Jiye Yan, Nan Zhou
Fungal diversity - 2014 -
Improving ITS sequence data for identification of plant pathogenic
fungi
R. Henrik Nilsson, Kevin D. Hyde, Julia Pawłowska, Martin Ryberg, Leho Tedersoo, Anders Bjørnsgard Aas, Siti A. Alias, Artur Alves, Cajsa Lisa Anderson, Alexandre Antonelli, A. Elizabeth Arnold, Barbara Bahnmann, Mohammad Bahram, Johan Bengtsson-Palme, Anna Berlin, Sara Branco, Putarak Chomnunti, Asha Dissanayake, Rein Drenkhan, Hanna Friberg, Tobias Guldberg Frøslev, Bettina Halwachs, Martin Hartmann, Beatrice Henricot, Ruvishika Jayawardena, Ari Jumpponen, Håvard Kauserud, Sonja Koskela, Tomasz Kulik, Kare Liimatainen, Björn Lindahl, Daniel Lindner, Jian-Kui Liu, Sajeewa Maharachchikumbura, Dimuthu Manamgoda, Svante Martinsson, Maria Alice Neves, Tuula Niskanen, Stephan Nylinder, Olinto Liparini Pereira, Danilo Batista Pinho, Teresita M. Porter, Valentin Queloz, Taavi Riit, Marisol Sánchez-García, Filipe de Sousa, Emil Stefańczyk, Mariusz Tadych, Susumu Takamatsu, Qing Tian, Dhanushka Udayanga, Martin Unterseher, Zheng Wang, Saowanee Wikee, Jiye Yan, Ellen Larsson, Karl-Henrik Larsson, Urmas Kõljalg, Kessy Abarenkov
Fungal diversity - 2014 -
Agaricomycetes
David S. Hibbett, Robert Bauer, Manfred Binder, Admir J. Giachini, Kentaro Hosaka, Alfredo Justo, Ellen Larsson, Karl-Henrik Larsson, James D. Lawrey, Otto Miettinen, Laszlo Nagy, R. Henrik Nilsson, Michael Weiß, R. Greg Thorn
The Mycota - 2014 -
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for
Fungi
Conrad L. Schoch, Barbara Robbertse, Vincent Robert, Duong Vu, Gianluigi Cardinali, Laszlo Irinyi, Wieland Meyer, R. Henrik Nilsson, Karen Hughes, Andrew N. Miller, Paul M. Kirk, Kessy Abarenkov, M. Catherine Aime, Hiran A. Ariyawansa, Martin Bidartondo, Teun Boekhout, Bart Buyck, Qing Cai, Jie Chen, Ana Crespo, Pedro W. Crous, Ulrike Damm, Z. Wilhelm De Beer, Bryn T. M. Dentinger, Pradeep K. Divakar, Margarita Dueñas, Nicolas Feau, Katerina Fliegerova, Miguel A. García, Zai-Wei Ge, Gareth W. Griffith, Johannes Z. Groenewald, Marizeth Groenewald, Martin Grube, Marieka Gryzenhout, Cécile Gueidan, Liangdong Guo, Sarah Hambleton, Richard Hamelin, Karen Hansen, Valérie Hofstetter, Seung-Beom Hong, Jos Houbraken, Kevin D. Hyde, Patrik Inderbitzin, Peter R. Johnston, Samantha C. Karunarathna, Urmas Kõljalg, Gábor M. Kovács, Ekaphan Kraichak, Krisztina Krizsan, Cletus P. Kurtzman, Karl-Henrik Larsson, Steven Leavitt, Peter M. Letcher, Kare Liimatainen, Jian-Kui Liu, D. Jean Lodge, Janet Jennifer Luangsaard, H. Thorsten Lumbsch, Sajeewa S.N. Maharachchikumbura, Dimuthu Manamgoda, María P. Martín, Andrew M. Minnis, Jean-Marc Moncalvo, Giuseppina Mulè, Karen K. Nakasone, Tuula Niskanen, Ibai Olariaga, Tamás Papp, Tamás Petkovits, Raquel Pino-Bodas, Martha J. Powell, Huzefa A. Raja, Dirk Redecker, J. M. Sarmiento-Ramirez, Keith A. Seifert, Bhushan Shrestha, Soili Stenroos, Benjamin Stielow, Sung-Oui Suh, Kazuaki Tanaka, Leho Tedersoo, M. Teresa Telleria, Dhanushka Udayanga, Wendy A. Untereiner, Javier Diéguez Uribeondo, Krishna V. Subbarao, Csaba Vágvölgyi, Cobus Visagie, Kerstin Voigt, Donald M. Walker, Bevan S. Weir, Michael Weiß, Nalin N. Wijayawardene, Michael J. Wingfield, J. P. Xu, Zhu L. Yang, Ning Zhang, Wen-ying Zhuang, Scott Federhen
Database: The Journal of Biological Databases and Curation - 2014 -
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing
data
Johan Bengtsson-Palme, Martin Ryberg, Martin Hartmann, Sara Branco, Zheng Wang, Anna Godhe, Pierre De Wit, Marisol Sánchez-García, Ingo Ebersberger, Filipe de Sousa, Anthony S. Amend, Ari Jumpponen, Martin Unterseher, Erik Kristiansson, Kessy Abarenkov, Yann Bertrand, Kemal Sanli, Karl Martin Eriksson, Unni Vik, Vilmar Veldre, R. Henrik Nilsson
Methods in Ecology and Evolution - 2013 -
Incorporating molecular data in fungal systematics: a guide for aspiring
researchers
Kevin D. Hyde, Dhanushka Udayanga, Dimuthu S. Manamgoda, Leho Tedersoo, Ellen Larsson, Kessy Abarenkov, Yann Bertrand, Bengt Oxelman, Martin Hartmann, Håvard Kauserud, Martin Ryberg, Erik Kristiansson, R. Henrik Nilsson
Current Research in Environmental and Applied Mycology - 2013 -
European earthstars in Geastraceae (Geastrales, Phallomycetidae) – a systematic approach using morphology and molecular sequence
data
Mikael Jeppson, R. Henrik Nilsson, Ellen Larsson
Systematics and Biodiversity - 2013 -
Towards a unified paradigm for sequence-based identification of
fungi.
Urmas Kõljalg, R. Henrik Nilsson, Kessy Abarenkov, Leho Tedersoo, Andy F S Taylor, Mohammad Bahram, Scott T Bates, Thomas D Bruns, Johan Bengtsson-Palme, Tony M Callaghan, Brian Douglas, Tiia Drenkhan, Ursula Eberhardt, Margarita Dueñas, Tine Grebenc, Gareth W Griffith, Martin Hartmann, Paul M Kirk, Petr Kohout, Ellen Larsson, Björn D Lindahl, Robert Lücking, María P Martín, P Brandon Matheny, Nhu H Nguyen, Tuula Niskanen, Jane Oja, Kabir G Peay, Ursula Peintner, Marko Peterson, Kadri Põldmaa, Lauri Saag, Irja Saar, Arthur Schüßler, James A Scott, Carolina Senés, Matthew E Smith, Ave Suija, D Lee Taylor, M Teresa Telleria, Michael Weiss, Karl-Henrik Larsson
Molecular ecology - 2013 -
Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in
fungi
Daniel L. Lindner, Tor Carlsen, R. Henrik Nilsson, Marie Davey, Trond Schumacher, Håvard Kauserud
Ecology and Evolution - 2013 -
Nutrient enrichment increased species richness of leaf litter fungal assemblages in a tropical
forest
Jennifer Kerekes, Michael Kaspari, Bradley Stevenson, R. Henrik Nilsson, Martin Hartmann, Anthony Amend, Thomas D. Bruns
Molecular Ecology - 2013 -
Fungal community analysis by high-throughput sequencing of amplified markers – a user's
guide
Björn D. Lindahl, R. Henrik Nilsson, Leho Tedersoo, Kessy Abarenkov, Tor Carlsen, Rasmus Kjøller, Urmas Kõljalg, Taina Pennanen, Søren Rosendahl, Jan Stenlid, Håvard Kauserud
New Phytologist - 2013 -
Meeting Report: Fungal ITS Workshop (October
2012)
Scott T. Bates, Steven Ahrendt, Holly M. Bik, Thomas D. Bruns, J. Gregory Caporaso, James Cole, Michael Dwan, Noah Fierer, Dai Gu, Shawn Houston, Rob Knight, Jon Leff, Christopher Lewis, Juan P. Maestre, Daniel McDonald, R. Henrik Nilsson, Andrea Porras-Alfaro, Vincent Robert, Conrad Schoch, James Scott, D. Lee Taylor, Laura Wegener Parfrey, Jason E. Stajich
Standards in Genomic Sciences - 2013 -
Species complexes in Hericium (Russulales, Agaricomycota) and a new species - Hericium rajchenbergii - from southern South
America
Nils Hallenberg, R. Henrik Nilsson, Gerardo Robledo
Mycological Progress - 2013 -
ITS1 versus ITS2 as DNA metabarcodes for
fungi
Rakel Blaalid, Surendra Kumar, R. Henrik Nilsson, Kessy Abarenkov, Paul Kirk, Håvard Kauserud
Molecular Ecology Resources - 2013 -
Metaxa,
overview
Johan Bengtsson-Palme, Martin Hartmann, Karl Martin Eriksson, R. Henrik Nilsson
Encyclopedia of Metagenomics - 2013 -
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS
sequences
R. Henrik Nilsson, Leho Tedersoo, Kessy Abarenkov, Martin Ryberg, Erik Kristiansson, Martin Hartmann, Conrad L. Schoch, Johan A. A. Nylander, Johannes Bergsten, Teresita M. Porter, Ari Jumpponen, Parag Vaishampayan, Otso Ovaskainen, Nils Hallenberg, Johan Bengtsson-Palme, Martin Eriksson, Karl-Henrik Larsson, Ellen Larsson, Urmas Kõljalg, G. Schoch
MycoKeys - 2012 -
Megraft: A software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length
metagenomes
Johan Bengtsson-Palme, Martin Hartmann, Martin Unterseher, Parag Vaishampayan, Kessy Abarenkov, Lisa Durso, Elisabeth M. Bik, James R. Garey, Martin Eriksson, R. Henrik Nilsson
Research in Microbiology - 2012 -
Soil fungal community structure along a soil health gradient in pea fields examined using deep amplicon
sequencing
Lihui Xu, Sabine Ravnskov, John Larsen, R. Henrik Nilsson, Mogens Nicolaisen
Soil Biology & Biochemistry - 2012 -
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS
sequences
R. Henrik Nilsson, Leho Tedersoo, Kessy Abarenkov, Martin Ryberg, Erik Kristiansson, Martin Hartmann, Conrad L. Schoch, Johan A. A. Nylander, Johannes Bergsten, Teresita M. Porter, Ari Jumpponen, Parag Vaishampayan, Otso Ovaskainen, Nils Hallenberg, Johan Bengtsson-Palme, Karl Martin Eriksson, Karl-Henrik Larsson, Ellen Larsson, Urmas Kõljalg
MycoKeys - 2012 -
Megraft: A software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length
metagenomes
Johan Bengtsson-Palme, Martin Hartmann, Martin Unterseher, Parag Vaishampayan, Kessy Abarenkov, Lisa Durso, Elisabeth M. Bik, James R. Garey, Karl Martin Eriksson, R. Henrik Nilsson
Research in Microbiology - 2012 -
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS
sequences
R. Henrik Nilsson, L Tedersoo, K Abarenkov, M Ryberg, Erik Kristiansson, M Hartmann, G Schoch, J Nylander, J Bergsten, T Porter, A Jumpponen, P Vaishampayan , O Ovaskainen, N Hallenberg, Johan Bengtsson-Palme, M Eriksson, K-H Larsson, E Larsson, U Kõljalg
MycoKeys - 2012 -
Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous
forests
Martin Hartmann, Charles G Howes, David VanInsberghe, Hang Yu, Dipankar Bachar, Richard Christen, R. Henrik Nilsson, Steven J Hallam, William W Mohn
The ISME Journal - 2012 -
Starting to unravel the layer of life on surfaces in the sea: Metagenomics of complex marine biofilm
communities
Karl Martin Eriksson, Kemal Sanli, Johan Bengtsson, R. Henrik Nilsson, Magnus Alm Rosenblad, Hans Blanck
ISME14 Conference, Copenhagen, Denmark, 2012-08-20 - 2012 -
Pyrosequencing-Derived Bacterial, Archaeal, and Fungal Diversity of Spacecraft Hardware Destined for
Mars
M. T. La Duc, P. Vaishampayan, R. Henrik Nilsson, T. Torok, K. Venkateswaran
Applied and Environmental Microbiology - 2012 -
High-Throughput Diversity Analysis and Quality Control of Environmental Data Derived from Next-Generation Sequencing
Studies
Johan Bengtsson, Martin Hartmann, Karl Martin Eriksson, R. Henrik Nilsson
ISME14 Conference, Copenhagen, Denmark, 2012 - 2012 -
Morphology, anatomy, and molecular studies of the ectomycorrhiza formed axenically by the fungus Sistotrema sp.
(Basidiomycota)
Babette Münzenberger, Beate Schneider, R. Henrik Nilsson, Ben Bubner, Karl-Henrik Larsson, Reinhard F. Hüttl
Mycological Progress - 2012 -
Unravelling soil fungal communities from different Mediterranean land-use
backgrounds
Alberto Orgiazzi, Erica Lumini, R. Henrik Nilsson, Mariangela Girlanda, Alfredo Vizzini, Paola Bonfante, Valeria Bianciotto
PLoS ONE - 2012 -
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for
Fungi
CL Schoch, KA Seifert, S Huhndorf, Vincent Robert, JL Spouge, CA Levesque, W Chen, E Bolchacova, K Voigt, PW Crous, AN Miller, MJ Wingfield, MC Aime, KD An, FY Bai, RW Barreto, D Begerow, MJ Bergeron, M Blackwell, T Boekhout, M Bogale, N Boonyuen, AR Burgaz, B Buyck, L Cai, Q Cai, G Cardinali, P Chaverri, BJ Coppins, A Crespo, P Cubas, C Cummings, U Damm, ZW de Beer, GS de Hoog, R Del-Prado, B Dentinger, J Diéguez-Uribeondo, PK Divakar, B Douglas, M Dueñas, TA Duong, U Eberhardt, JE Edwards, MS Elshahed, K Fliegerova, M Furtado, M García, ZW Ge, GW Griffith, K Griffiths, JZ Groenewald, M Groenewald, M Grube, M Gryzenhout, LD Guo, F Hagen, S Hambleton, RC Hamelin, K Hansen, P Harrold, G Heller, C Herrera, K Hirayama, Y Hirooka, HM Ho, K Hoffmann, V Hofstetter, F Högnabba, PM Hollingsworth, SB Hong, K Hosaka, J Houbraken, K Hughes, S Huhtinen, KD Hyde, T James, EM Johnson, JE Johnson, PR Johnston, EB Jones, LJ Kelly, PM Kirk, DG Knapp, U Kõljalg, GM Kovács, CP Kurtzman, S Landvik, SD Leavitt, AS Liggenstoffer, K Liimatainen, L Lombard, JJ Luangsa-Ard, HT Lumbsch, H Maganti, SS Maharachchikumbura, MP Martin, TW May, AR McTaggart, AS Methven, W Meyer, J-M Moncalvo, S Mongkolsamrit, LG Nagy, R. Henrik Nilsson, T Niskanen, I Nyilasi, G Okada, I Okane, I Olariaga, J Otte, T Papp, D Park, T Petkovits, R Pino-Bodas, W Quaedvlieg, HA Raja, D Redecker, TL Rintoul, C Ruibal, JM Sarmiento-Ramírez, I Schmitt, A Schüßler, C Shearer, K Sotome, FO Stefani, S Stenroos, B Stielow, H Stockinger, S Suetrong, SO Suh, GH Sung, M Suzuki, K Tanaka, L Tedersoo, MT Telleria, E Tretter, WA Untereiner, H Urbina, C Vágvölgyi, A Vialle, TD Vu, G Walther, QM Wang, Y Wang, BS Weir, M Weiß, MM White, J Xu, R Yahr, ZL Yang, A Yurkov, JC Zamora, N Zhang, WY Zhuang, D Schindel
Proceedings of the National Academy of Sciences of the United States of America - 2012 -
Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing
datasets
Johan Bengtsson-Palme, Martin Eriksson, Martin Hartmann, Wang Zheng, Belle Damodara Shenoy, Gwen-Aëlle Grelet, Kessy Abarenkov, Anna Petri, Magnus Alm Rosenblad, R. Henrik Nilsson
Antonie van Leeuwenhoek. International Journal of General and Molecular Microbiology - 2011 -
Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing
datasets
Johan Bengtsson-Palme, Karl Martin Eriksson, Martin Hartmann, Wang Zheng, Belle Damodara Shenoy, Gwen-Aëlle Grelet, Kessy Abarenkov, Anna Petri, Magnus Alm Rosenblad, R. Henrik Nilsson
Antonie van Leeuwenhoek: international journal of general and molecular microbiology - 2011 -
Molecular identification of fungi: rationale, philosophical concerns, and the UNITE
database
R. Henrik Nilsson, Kessy Abarenkov, Karl-Henrik Larsson, Urmas Kõljalg
The Open Applied Informatics Journal - 2011 -
Metaxa: Automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and
chloroplasts
Johan Bengtsson, Karl Martin Eriksson, Martin Hartmann, Zheng Wang, Belle D Shenoy, G Grelet, Kessy Abarenkov, Anna Petri, Magnus Alm Rosenblad, R. Henrik Nilsson
SocBiN Bioinformatics Conference, Helsinki, Finland, 2011 - 2011 -
A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and
reorientation
R. Henrik Nilsson, Vilmar Veldre, Zheng Wang, Martin Eckart, Sara Branco, Martin Hartmann, Christopher Quince, Anna Godhe, Yann Bertrand, Johan F. Alfredsson, Karl-Henrik Larsson, Urmas Kõljalg, Kessy Abarenkov
Mycoscience - 2011 -
Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of ITS sequences of mycorrhizal
fungi
Leho Tedersoo, Kessy Abarenkov, R. Henrik Nilsson, Arthur Schüssler, Gwen-Aëlle Grelet, Petr Kohout, Jane Oja, Gregory M. Bonito, Vilmar Veldre, Teele Jairus, Martin Ryberg, Karl-Henrik Larsson, Urmas Kõljalg
PLoS ONE - 2011 -
DivBayes and SubT: exploring species diversification using Bayesian
statistics
Martin Ryberg, R. Henrik Nilsson, Brandon Matheny
Bioinformatics - 2011 -
Towards standardization of the description and publication of next-generation sequencing datasets of fungal
communities
R. Henrik Nilsson, Leho Tedersoo, Björn D. Lindahl, Rasmus Kjøller, Tor Carlsen, Christopher Quince, Kessy Abarenkov, Taina Pennanen, Jan Stenlid, Tom Bruns, Karl-Henrik Larsson, Urmas Kõljalg, Håvard Kauserud
New Phytologist - 2011 -
V-RevComp: automated high-throughput detection of reverse complementary 16S ribosomal RNA gene sequences in large environmental and taxonomic
datasets
Martin Hartmann, Charles G. Howes, Vilmar Veldre, Salome Schneider, Parag A. Vaishampayan, Anthony C. Yannarell, Christopher Quince, Per Johansson, K. Johanna Björkroth, Kessy Abarenkov, Steven J. Hallam, William W. Mohn, R. Henrik Nilsson
FEMS Microbiology Letters - 2011 -
Tasting soil fungal diversity with earth tongues: phylogenetic test of SATé alignments for environmental ITS
data
Zheng Wang, R. Henrik Nilsson, Francesc Lopez-Giraldez, Wen-ying Zhuang, Yu-cheng Dai, Peter R. Johnston, Jeffrey P. Townsend
PLoS ONE - 2011 -
Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental
sequences
D. S. Hibbett, Anders Ohman, Dylan Glotzer, Mitchell Nuhn, Paul Kirk, R. Henrik Nilsson
Fungal Biology Reviews - 2011 -
Rethinking taxon sampling in the light of environmental
sequencing
R. Henrik Nilsson, Martin Ryberg, Elisabet Sjökvist, Kessy Abarenkov
Cladistics - 2011 -
An open source chimera checker for the fungal ITS
region
R. Henrik Nilsson, Kessy Abarenkov, Vilmar Veldre, Stephan Nylinder, Pierre De Wit, Sara Brosché, Johan F. Alfredsson, Martin Ryberg, Erik Kristiansson
Molecular Ecology Resources - 2010 -
An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular
ecology
R. Henrik Nilsson, Vilmar Veldre, Martin Hartmann, Martin Unterseher, Anthony Amend, Johannes Bergsten, Erik Kristiansson, Martin Ryberg, Ari Jumpponen, Kessy Abarenkov
Fungal Ecology - 2010 -
An open source chimera checker for the fungal ITS
region
R. Henrik Nilsson, Vilmar Veldre, Kessy Abarenkov, Stephan Nylinder, Pierre De Wit, Sara Brosché, Johan Alfredsson, Martin Ryberg, Erik Kristiansson
9th International Mycological Congress, Edinburgh, UK - 2010 -
The white-rotting genus Phanerochaete is polyphyletic and distributed throughout the phleboid clade of the Polyporales
(Basidiomycota)
Sheng-Hua Wu, R. Henrik Nilsson, Cheng-Tao Chen, Shi-Yi Yu, Nils Hallenberg
Fungal Diversity - 2010 -
PlutoF—a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS
sequences
Kessy Abarenkov, L. Tedersoo, R. Henrik Nilsson, Kai Vellak, Irja Saar, Vilmar Veldre, Erast Parmasto, Marko Prous, Anne Aan, Margus Ots, Olavi Kurina, Ivika Ostonen, Janno Jõgeva, Siim Halapuu, Kadri Põldmaa, Märt Toots, Jaak Truu, Karl-Henrik Larsson, Urmas Kõljalg
Evolutionary Bioinformatics - 2010 -
V-Xtractor: An open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16 S/18 S) ribosomal RNA gene
sequences
Martin Hartmann, Charles G. Howes, Kessy Abarenkov, William W. Mohn, R. Henrik Nilsson
Journal of Microbiological Methods - 2010 -
Phylogeny and taxonomy of the genus Vuilleminia (Basidiomycota) based on molecular and morphological evidence, with new insights into
Corticiales
Masoomeh Ghobad-Nejhad, R. Henrik Nilsson, Nils Hallenberg
TAXON - 2010 -
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological
biases
L. Tedersoo, R. Henrik Nilsson, Kessy Abarenkov, Teele Jairus, Ave Sadam, Irja Saar, Mohammad Bahram, Eneke Bechem, George Chuyong, Urmas Kõljalg
New Phytologist - 2010 -
New features of the UNITE database for molecular identification of
fungi
R. Henrik Nilsson, Urmas Kõljalg, Kessy Abarenkov
9th International Mycological Congress, Edinburgh, UK (oral presentation; FESIN/UNITE workshop) - 2010 -
Current state and perspectives of fungal DNA barcoding and rapid identification
procedures
D. Begerow, R. Henrik Nilsson, Martin Unterseher, Wolfgang Maier
Applied Microbiology and Biotechnology - 2010 -
The UNITE database for molecular identification of fungi – recent updates and future
perspectives
Kessy Abarenkov, R. Henrik Nilsson, Karl-Henrik Larsson, Ian J Alexander, U. Eberhardt, Susanne Erland, Klaus Höiland, Rasmus Kjöller, Ellen Larsson, T. Pennanen, Robin Sen, A. F. S. Taylor, L. Tedersoo, Björn M. Ursing, T. Vralstad, Kare Liimatainen, Ursula Peintner, Urmas Kõljalg
New Phytologist - 2010 -
A phylogenetic approach to detect selection on the target site of the antifouling compound irgarol in tolerant periphyton
communities
Martin Eriksson, Alexandre Antonelli, R. Henrik Nilsson, Adrian K Clarke, Hans Blanck
Environmental Microbiology - 2009 -
A phylogenetic approach to detect selection on the target site of the antifouling compound irgarol in tolerant periphyton
communities
Karl Martin Eriksson, Alexandre Antonelli, R. Henrik Nilsson, Adrian K Clarke, Hans Blanck
Environmental Microbiology - 2009 -
A phylogenetic approach to detect selection on the target site of the antifouling compound irgarol in tolerant periphyton
communities
Karl Martin Eriksson, Alexandre Antonelli, R. Henrik Nilsson, Adrian K Clarke, Hans Blanck
Environmental Microbiology - 2009 -
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal
diversity
Marc Buee, Marlis Reich, C. Murat, E. Morin, R. Henrik Nilsson, S. Uroz, Francis Martin
New Phytologist - 2009 -
The ITS region as a target for characterization of fungal communities using emerging sequencing
technologies
R. Henrik Nilsson, Martin Ryberg, Kessy Abarenkov, Elisabet Sjökvist, Erik Kristiansson
FEMS Microbiology Letters - 2009 -
A software pipeline for processing and identification of fungal ITS
sequences
R. Henrik Nilsson, Gunilla Bok, Martin Ryberg, Erik Kristiansson, Nils Hallenberg
Source Code for Biology and Medicine - 2009 -
An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal
diversity
Martin Ryberg, Erik Kristiansson, Elisabet Sjökvist, R. Henrik Nilsson
New Phytologist - 2009 -
A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across
membranes
Gern Bienert, Michael Thorsen, Manuela Schüssler, R. Henrik Nilsson, Annemarie Wagner, Markus J. Tamás, Thomas Jahn
BMC Biology - 2008 -
A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across
membranes
Gern Bienert, Michael Thorsen, Manuela Schüssler, R. Henrik Nilsson, Annemarie Wagner, Markus J. Tamás, Thomas Jahn
20th New Phytologist Symposium, Aberdeen, UK - 2008 -
Fungal phyloinformatics and ITS-based data mining in
mycology
R. Henrik Nilsson
International Tagung der Deutschen Gesellschaft fur Mykologie 2008 - 2008 -
Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species
Identification
R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg, Nils Hallenberg, Karl-Henrik Larsson
Evolutionary Bioinformatics - 2008 -
Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe
(Basidiomycota)
Martin Ryberg, R. Henrik Nilsson, Erik Kristiansson, Mats H. Töpel, Stig Jacobsson, Ellen Larsson
BMC Evolutionary Biology - 2008 -
Pseudolagarobasidium (Basidiomycota): on the reinstatement of a genus of parasitic, saprophytic, and endophytic resupinate
fungi
Nils Hallenberg, Martin Ryberg, R. Henrik Nilsson, Alan R. Wood, Sheng-Hua Wu
Botany - 2008 -
Preserving accuracy in
GenBank
Martin Bidartondo, Thomas Bruns, Meredith Blackwell, Ivan Edwards, A. F. S. Taylor, Thomas Horton, Ning Zhang, Urmas Kõljalg, Gregoriana May, Thomas Kuyper, James Bever, Gregory Gilbert, John Taylor, Todd DeSantis, Anne Pringle, James Borneman, Greg Thorn, Mary Berbee, Gregory Mueller, Gary Andersen, Else Vellinga, Sara Branco, Ian Anderson, Ian Dickie, Peter Avis, Sari Timonen, Rasmus Kjöller, D. J. Lodge, Richard Bateman, Andy Purvis, Pedro Crous, Christine Hawkes, Tim Barraclough, Austin Burt, R. Henrik Nilsson, Karl-Henrik Larsson, Martin Ryberg, and coauthors
Science - 2008 -
The Peniophorella praetermissa species complex
(Basidiomycota)
Nils Hallenberg, R. Henrik Nilsson, Alexandre Antonelli, Sheng-Hua Wu, Nitaro Maekawa, Björn Nordén
Mycological Research - 2007 -
Fungal taxonomy and systematics in the digital era, with an outlook on the cantharelloid clade
(Basidiomycota)
R. Henrik Nilsson
2007 -
Något är konstigt i
kantarellgruppen.
R. Henrik Nilsson
Puggehatten - 2007 -
Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota,
Fungi)
P. B. Matheny, Z. Wang, M. Binder, J Curtis, Y Lim, R. Henrik Nilsson
Molecular Phylogenetics and Evolution - 2007 -
Mellan myensk och myling - några trender inom
svampforskningen.
R. Henrik Nilsson
Magasin Brun - 2007 -
Phylogenetic studies in Hypochnicium (Basidiomycota), with special emphasis on species from New
Zealand
B. Paulus, R. Henrik Nilsson, Nils Hallenberg
New Zealand Journal of Botany - 2007 -
Taxonomic reliability of DNA sequences in public sequence databases: A fungal
perspective
R. Henrik Nilsson, Martin Ryberg, Erik Kristiansson, Kessy Abarenkov, Karl-Henrik Larsson, Urmas Kõljalg
PLoS ONE - 2006 -
Approaching the taxonomic affiliation of unidentified sequences in public databases – an example from the mycorrhizal
fungi.
R. Henrik Nilsson
8th International Mycological Congress, Cairns, Australia - 2006 -
An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA
sequences
M. C. Aime, P. B. Matheny, D. A. Henk, E. M. Frieders, R. Henrik Nilsson, M. Piepenbring, D. J. McLaughlin, L. J. Szabo, D. Begerow, J. P. Sampaio, R. Bauer, M. Weiss, F. Oberwinkler, D. Hibbett
Mycologia - 2006 -
Fruiting body-guided molecular identification of root-tip mantle mycelia provides strong indications of ectomycorrhizal associations in two species of Sistotrema
(Basidiomycota)
R. Henrik Nilsson, Karl-Henrik Larsson, Ellen Larsson, U. Koljalg
Mycological Research - 2006 -
The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction
methods
J. M. Moncalvo, R. Henrik Nilsson, B. Koster, S. M. Dunham, T. Bernauer, P. B. Matheny, T. M. Porter, S. Margaritescu, M. Weiss, S. Garnica, E. Danell, G. Langer, E. Langer, Ellen Larsson, Karl-Henrik Larsson, R. Vilgalys
Mycologia - 2006 -
Approaching the taxonomic affiliation of unidentified sequences in public databases – an example from the mycorrhizal
fungi
R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg, Karl-Henrik Larsson
BMC Bioinformatics - 2005 -
Biogeography and taxonomy in wood-inhabiting
basidiomycetes
Nils Hallenberg, R. Henrik Nilsson
Southern African Journal of Science - 2005 -
UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal
fungi
Urmas Kõljalg, Karl-Henrik Larsson, Kessy Abarenkov, R. Henrik Nilsson, I. J. Alexander, U. Eberhardt, S. Erland, K. Hoiland, R. Kjoller, Ellen Larsson, T. Pennanen, R. Sen, A. F. S. Taylor, L. Tedersoo, T. Vralstad, Björn M. Ursing
New Phytologist - 2005 -
Automated phylogenetic taxonomy: An example in the homobasidiomycetes (mushroom-forming
fungi)
D. S. Hibbett, R. Henrik Nilsson, M. Snyder, M. Fonseca, J. Costanzo, M. Shonfeld
Systematic Biology - 2005 -
Cortbase version 2 – extensive updates of a nomenclatural database for corticioid fungi
(Hymenomycetes)
Erast Parmasto, R. Henrik Nilsson, Karl-Henrik Larsson
PhyloInformatics - 2004 -
Towards an automated phylogenetic classification of
homobasidiomycetes
R. Henrik Nilsson, D. S. Hibbett, M. Snyder, M. Shonfeld
Mycological Society of America (MSA) Meeting 2004 - 2004 -
galaxie - CGI scripts for sequence identification through automated phylogenetic
analysis
R. Henrik Nilsson, Karl-Henrik Larsson, Björn M. Ursing
Bioinformatics - 2004 -
galaxieEST: addressing EST identity through automated phylogenetic
analysis
R. Henrik Nilsson, B. Rajashekar, Karl-Henrik Larsson, B. M. Ursing
Bmc Bioinformatics - 2004 -
Phylogeography of Hyphoderma setigerum (Basidiomycota) in the Northern
Hemisphere
R. Henrik Nilsson, Nils Hallenberg, Björn Nordén, Nitaro Maekawa, Sheng-Hua Wu
Mycological Research - 2003 -
Phylogeny of the Hypochnicium punctulatum complex as inferred from ITS sequence
data
R. Henrik Nilsson, Nils Hallenberg
Mycologia - 2003